Department of Anatomy & Cell Biology @ Western University - Code Repository

A place the view, share, use and modify code from faculty and students in the department. All code is free to use under the GNU License; however, please consider acknowledging any previous authors in your work (including any sources referenced in the project)!

Embed 3D Models in a PDF

Tyler Beveridge

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Learn to add a fully interactable 3D model made in Blender as a figure in your PDF.

Scrollable Image Stacks

Tyler Beveridge

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Host image stacks (e.g, animations or CT scans) on OWL to allow users to interactively view your data.

3D Shape Comparisons

Lily Wolak

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Qualitatively visualize shape differences between specimens using 3D heatmaps

Linear Mixed Effect Models & Selective Post-Hoc Comparisons

JT Walker

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Account for random variables and increase power by running only relevant post-hoc comparisons

B-Spline Data Fitting

JT Walker

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The basis-spline function allows you to fit data that might have different best fits along the the x-axis

Generalized Procrustes Analysis in R

Elizabeth Jewlal & Kat Willmore

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Align 3D objects using a 'best-fit' method to allow for comparisons between shapes

Generalized Procrustes Analysis in MATLAB

Kait Marshall & Tyler Beveridge

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Align 3D objects using a 'best-fit' method to allow for comparisons between shapes

Custom Shaped Word Clouds

Tyler Beveridge

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Shape your word clouds using an outline (mask) of your choice.

Autosegment using Seed Growing

Kait Marshall & Tyler Beveridge

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Use a seed and a region growing algorithm to selectively autosegment structures on CT

Measure Surface Topography

Santiago Cobos

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Quantitatively measure changes to a surface and visualize with a heat map

Autopopulate a Manuscript List from PubMed

Tyler Beveridge

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Javascript to generate a list of your most recent publications from PubMed for your lab's website