Department of Anatomy & Cell Biology @ Western University - Code Repository
A place the view, share, use and modify code from faculty and students in the department. All code is free to use under the GNU License; however, please consider acknowledging any previous authors in your work (including any sources referenced in the project)!
Embed 3D Models in a PDF
Tyler Beveridge
Download Instructions & Source CodeLearn to add a fully interactable 3D model made in Blender as a figure in your PDF.
Scrollable Image Stacks
Tyler Beveridge
Download Instructions & Source CodeHost image stacks (e.g, animations or CT scans) on OWL to allow users to interactively view your data.
3D Shape Comparisons
Lily Wolak
Download Instructions & Source CodeQualitatively visualize shape differences between specimens using 3D heatmaps
Linear Mixed Effect Models & Selective Post-Hoc Comparisons
JT Walker
Download Instructions & Source CodeAccount for random variables and increase power by running only relevant post-hoc comparisons
B-Spline Data Fitting
JT Walker
Download Instructions & Source CodeThe basis-spline function allows you to fit data that might have different best fits along the the x-axis
Generalized Procrustes Analysis in R
Elizabeth Jewlal & Kat Willmore
Download Instructions & Source CodeAlign 3D objects using a 'best-fit' method to allow for comparisons between shapes
Generalized Procrustes Analysis in MATLAB
Kait Marshall & Tyler Beveridge
Download Instructions & Source CodeAlign 3D objects using a 'best-fit' method to allow for comparisons between shapes
Custom Shaped Word Clouds
Tyler Beveridge
Download Instructions & Source CodeShape your word clouds using an outline (mask) of your choice.
Autosegment using Seed Growing
Kait Marshall & Tyler Beveridge
Download Instructions & Source CodeUse a seed and a region growing algorithm to selectively autosegment structures on CT
Measure Surface Topography
Santiago Cobos
Download Instructions & Source CodeQuantitatively measure changes to a surface and visualize with a heat map
Autopopulate a Manuscript List from PubMed
Tyler Beveridge
Download Instructions & Source CodeJavascript to generate a list of your most recent publications from PubMed for your lab's website